Detailed information of SNP:



SNP ID: sf1007461590(Gbrowse)

Chromosome: chr10

Position: 7461590
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 51.69% 48.31%
All Indica799 44.81% 55.19%
All Japonica496 54.03% 45.97%
Aus67 100.00% 0.00%
Indica I375 13.33% 86.67%
Indica II213 80.28% 19.72%
Indica Intermediate211 64.93% 35.07%
Temperate Japonica334 46.41% 53.59%
Tropical Japonica94 64.89% 35.11%
Japonica Intermediate68 76.47% 23.53%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 61.90% 38.10%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1007461590 C->T INTERGENIC None