Detailed information of SNP:
|
SNP ID:
sf1007461590(Gbrowse)
Chromosome: chr10 Position: 7461590 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 51.69% | 48.31% |
| All Indica | 799 | 44.81% | 55.19% |
| All Japonica | 496 | 54.03% | 45.97% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 13.33% | 86.67% |
| Indica II | 213 | 80.28% | 19.72% |
| Indica Intermediate | 211 | 64.93% | 35.07% |
| Temperate Japonica | 334 | 46.41% | 53.59% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007461590 | C->T | INTERGENIC | None |