Detailed information of SNP:
SNP ID:
sf1007461590(Gbrowse)
Chromosome: chr10 Position: 7461590 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1418 | 51.69% | 48.31% |
All Indica | 799 | 44.81% | 55.19% |
All Japonica | 496 | 54.03% | 45.97% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 13.33% | 86.67% |
Indica II | 213 | 80.28% | 19.72% |
Indica Intermediate | 211 | 64.93% | 35.07% |
Temperate Japonica | 334 | 46.41% | 53.59% |
Tropical Japonica | 94 | 64.89% | 35.11% |
Japonica Intermediate | 68 | 76.47% | 23.53% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1007461590 | C->T | INTERGENIC | None |