Detailed information of SNP:
|
SNP ID:
sf1007471705(Gbrowse)
Chromosome: chr10 Position: 7471705 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 53.02% | 46.98% |
| All Indica | 791 | 47.28% | 52.72% |
| All Japonica | 496 | 53.63% | 46.37% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 17.34% | 82.66% |
| Indica II | 212 | 81.13% | 18.87% |
| Indica Intermediate | 210 | 65.71% | 34.29% |
| Temperate Japonica | 335 | 45.97% | 54.03% |
| Tropical Japonica | 93 | 65.59% | 34.41% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007471705 | T->C | INTERGENIC | None |