Detailed information of SNP:
|
SNP ID:
sf1007473201(Gbrowse)
Chromosome: chr10 Position: 7473201 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1249 | 71.50% | 28.50% |
| All Indica | 636 | 71.23% | 28.77% |
| All Japonica | 497 | 84.31% | 15.69% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 353 | 92.92% | 7.08% |
| Indica II | 137 | 33.58% | 66.42% |
| Indica Intermediate | 146 | 54.11% | 45.89% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 35 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007473201 | C->A | INTERGENIC | None |