Detailed information of SNP:
|
SNP ID:
sf1007475334(Gbrowse)
Chromosome: chr10 Position: 7475334 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 79.70% | 20.30% |
| All Indica | 799 | 84.98% | 15.02% |
| All Japonica | 497 | 84.71% | 15.29% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 42.55% | 57.45% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007475334 | G->A | LOC_Os10g13730(LOC_Os10g13730.1) | Synonymous |