Detailed information of SNP:
|
SNP ID:
sf1007475787(Gbrowse)
Chromosome: chr10 Position: 7475787 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 71.48% | 28.52% |
| All Indica | 793 | 50.57% | 49.43% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 370 | 22.97% | 77.03% |
| Indica II | 213 | 81.22% | 18.78% |
| Indica Intermediate | 210 | 68.10% | 31.90% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007475787 | C->T | INTERGENIC | None |