Detailed information of SNP:
|
SNP ID:
sf1007483241(Gbrowse)
Chromosome: chr10 Position: 7483241 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 59.70% | 40.30% |
| All Indica | 799 | 52.44% | 47.56% |
| All Japonica | 495 | 82.42% | 17.58% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 81.07% | 18.93% |
| Indica II | 213 | 19.72% | 80.28% |
| Indica Intermediate | 211 | 34.60% | 65.40% |
| Temperate Japonica | 334 | 97.31% | 2.69% |
| Tropical Japonica | 93 | 38.71% | 61.29% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007483241 | C->T | LOC_Os10g13740(LOC_Os10g13740.1) | Non-Synonymous SNP |