Detailed information of SNP:
|
SNP ID:
sf1007484714(Gbrowse)
Chromosome: chr10 Position: 7484714 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 66.17% | 33.83% |
| All Indica | 790 | 61.90% | 38.10% |
| All Japonica | 497 | 84.71% | 15.29% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 373 | 89.28% | 10.72% |
| Indica II | 209 | 29.19% | 70.81% |
| Indica Intermediate | 208 | 45.67% | 54.33% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 42.55% | 57.45% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007484714 | G->A | LOC_Os10g13740(LOC_Os10g13740.1) | INTRON |