Detailed information of SNP:
|
SNP ID:
sf1007504446(Gbrowse)
Chromosome: chr10 Position: 7504446 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1374 | 97.02% | 2.98% |
| All Indica | 796 | 96.61% | 3.39% |
| All Japonica | 456 | 96.93% | 3.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 96.52% | 3.48% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 209 | 96.17% | 3.83% |
| Temperate Japonica | 304 | 97.70% | 2.30% |
| Tropical Japonica | 89 | 93.26% | 6.74% |
| Japonica Intermediate | 63 | 98.41% | 1.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007504446 | C->T | LOC_Os10g13770(LOC_Os10g13770.1) | Synonymous |