Detailed information of SNP:
|
SNP ID:
sf1007505420(Gbrowse)
Chromosome: chr10 Position: 7505420 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 98.30% | 1.70% |
| All Indica | 791 | 98.48% | 1.52% |
| All Japonica | 496 | 97.78% | 2.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 210 | 98.57% | 1.43% |
| Indica Intermediate | 207 | 96.62% | 3.38% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007505420 | C->A | INTERGENIC | None |