Detailed information of SNP:
|
SNP ID:
sf1007508714(Gbrowse)
Chromosome: chr10 Position: 7508714 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 79.84% | 20.16% |
| All Indica | 799 | 85.23% | 14.77% |
| All Japonica | 497 | 84.10% | 15.90% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007508714 | G->A | LOC_Os10g13790(LOC_Os10g13790.1) | Non-Synonymous SNP |