Detailed information of SNP:
|
SNP ID:
sf1007521783(Gbrowse)
Chromosome: chr10 Position: 7521783 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 62.47% | 37.53% |
| All Indica | 796 | 56.03% | 43.97% |
| All Japonica | 497 | 83.90% | 16.10% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 373 | 87.13% | 12.87% |
| Indica II | 213 | 21.60% | 78.40% |
| Indica Intermediate | 210 | 35.71% | 64.29% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007521783 | C->T | LOC_Os10g13820(LOC_Os10g13820.1) | Non-Synonymous SNP |