Detailed information of SNP:
|
SNP ID:
sf1007540727(Gbrowse)
Chromosome: chr10 Position: 7540727 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 51.42% | 48.58% |
| All Indica | 794 | 44.21% | 55.79% |
| All Japonica | 497 | 53.72% | 46.28% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 12.87% | 87.13% |
| Indica II | 213 | 79.34% | 20.66% |
| Indica Intermediate | 208 | 64.42% | 35.58% |
| Temperate Japonica | 335 | 45.97% | 54.03% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007540727 | C->T | LOC_Os10g13840(LOC_Os10g13840.1) | INTRON |