Detailed information of SNP:
|
SNP ID:
sf1007556859(Gbrowse)
Chromosome: chr10 Position: 7556859 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 52.09% | 47.91% |
| All Indica | 797 | 44.17% | 55.83% |
| All Japonica | 493 | 55.78% | 44.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 13.64% | 86.36% |
| Indica II | 212 | 79.72% | 20.28% |
| Indica Intermediate | 211 | 62.56% | 37.44% |
| Temperate Japonica | 331 | 48.34% | 51.66% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007556859 | A->G | INTERGENIC | None |