Detailed information of SNP:
|
SNP ID:
sf1007557213(Gbrowse)
Chromosome: chr10 Position: 7557213 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 86.59% | 13.41% |
| All Indica | 799 | 87.11% | 12.89% |
| All Japonica | 497 | 85.71% | 14.29% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 47.87% | 52.13% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007557213 | G->A | INTERGENIC | None |