Detailed information of SNP:
|
SNP ID:
sf1007557447(Gbrowse)
Chromosome: chr10 Position: 7557447 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1357 | 94.77% | 5.23% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 437 | 84.21% | 15.79% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 289 | 76.47% | 23.53% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 55 | 98.18% | 1.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007557447 | C->A | INTERGENIC | None |