Detailed information of SNP:
|
SNP ID:
sf1007557599(Gbrowse)
Chromosome: chr10 Position: 7557599 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 53.25% | 46.75% |
| All Indica | 797 | 46.17% | 53.83% |
| All Japonica | 497 | 55.53% | 44.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 15.28% | 84.72% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 211 | 66.82% | 33.18% |
| Temperate Japonica | 335 | 48.06% | 51.94% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007557599 | C->A | INTERGENIC | None |