Detailed information of SNP:
|
SNP ID:
sf1007566089(Gbrowse)
Chromosome: chr10 Position: 7566089 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 74.24% | 25.76% |
| All Indica | 798 | 69.17% | 30.83% |
| All Japonica | 493 | 94.93% | 5.07% |
| Aus | 63 | 1.59% | 98.41% |
| Indica I | 375 | 89.07% | 10.93% |
| Indica II | 213 | 48.83% | 51.17% |
| Indica Intermediate | 210 | 54.29% | 45.71% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 75.00% | 25.00% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007566089 | G->A | INTERGENIC | None |