Detailed information of SNP:
|
SNP ID:
sf1007580095(Gbrowse)
Chromosome: chr10 Position: 7580095 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1203 | 62.09% | 37.91% |
| All Indica | 592 | 25.17% | 74.83% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 347 | 6.05% | 93.95% |
| Indica II | 122 | 64.75% | 35.25% |
| Indica Intermediate | 123 | 39.84% | 60.16% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 33 | 75.76% | 24.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007580095 | A->C | INTERGENIC | None |