Detailed information of SNP:
|
SNP ID:
sf1007597457(Gbrowse)
Chromosome: chr10 Position: 7597457 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 62.09% | 37.91% |
| All Indica | 799 | 55.82% | 44.18% |
| All Japonica | 497 | 83.70% | 16.30% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 86.93% | 13.07% |
| Indica II | 213 | 21.60% | 78.40% |
| Indica Intermediate | 211 | 35.07% | 64.93% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007597457 | C->T | LOC_Os10g13950(LOC_Os10g13950.1) | INTRON |