Detailed information of SNP:
|
SNP ID:
sf1007623352(Gbrowse)
Chromosome: chr10 Position: 7623352 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1244 | 78.30% | 21.70% |
| All Indica | 656 | 66.77% | 33.23% |
| All Japonica | 475 | 94.53% | 5.47% |
| Aus | 63 | 87.30% | 12.70% |
| Indica I | 309 | 69.58% | 30.42% |
| Indica II | 173 | 63.01% | 36.99% |
| Indica Intermediate | 174 | 65.52% | 34.48% |
| Temperate Japonica | 331 | 98.79% | 1.21% |
| Tropical Japonica | 83 | 74.70% | 25.30% |
| Japonica Intermediate | 61 | 98.36% | 1.64% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 37 | 83.78% | 16.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007623352 | T->C | LOC_Os10g13990(LOC_Os10g13990.1) | Non-Synonymous SNP |