Detailed information of SNP:
|
SNP ID:
sf1007633230(Gbrowse)
Chromosome: chr10 Position: 7633230 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 89.82% | 10.18% |
| All Indica | 795 | 90.94% | 9.06% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 371 | 83.02% | 16.98% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007633230 | C->T | INTERGENIC | None |