Detailed information of SNP:
|
SNP ID:
sf1007768343(Gbrowse)
Chromosome: chr10 Position: 7768343 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 95.18% | 4.82% |
| All Indica | 773 | 91.85% | 8.15% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 91.34% | 8.66% |
| Indica II | 211 | 91.47% | 8.53% |
| Indica Intermediate | 204 | 93.14% | 6.86% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007768343 | C->T | LOC_Os10g14795(LOC_Os10g14795.1) | Non-Synonymous SNP |