Detailed information of SNP:
|
SNP ID:
sf1007772012(Gbrowse)
Chromosome: chr10 Position: 7772012 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 90.11% | 9.89% |
| All Indica | 796 | 87.94% | 12.06% |
| All Japonica | 496 | 91.94% | 8.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 74.65% | 25.35% |
| Indica Intermediate | 208 | 83.65% | 16.35% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007772012 | C->T | INTERGENIC | None |