Detailed information of SNP:
|
SNP ID:
sf1007779979(Gbrowse)
Chromosome: chr10 Position: 7779979 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1181 | 70.36% | 29.64% |
| All Indica | 586 | 77.65% | 22.35% |
| All Japonica | 477 | 59.96% | 40.04% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 208 | 58.17% | 41.83% |
| Indica II | 196 | 91.84% | 8.16% |
| Indica Intermediate | 182 | 84.62% | 15.38% |
| Temperate Japonica | 335 | 56.42% | 43.58% |
| Tropical Japonica | 76 | 88.16% | 11.84% |
| Japonica Intermediate | 66 | 45.45% | 54.55% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007779979 | A->G | LOC_Os10g14814(LOC_Os10g14814.1) | INTRON |