Detailed information of SNP:
|
SNP ID:
sf1007779991(Gbrowse)
Chromosome: chr10 Position: 7779991 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1381 | 95.29% | 4.71% |
| All Indica | 787 | 95.68% | 4.32% |
| All Japonica | 482 | 99.79% | 0.21% |
| Aus | 60 | 71.67% | 28.33% |
| Indica I | 368 | 93.21% | 6.79% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 207 | 96.62% | 3.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 80 | 98.75% | 1.25% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007779991 | A->T | LOC_Os10g14814(LOC_Os10g14814.1) | INTRON |