Detailed information of SNP:
|
SNP ID:
sf1007787578(Gbrowse)
Chromosome: chr10 Position: 7787578 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 93.68% | 6.32% |
| All Indica | 763 | 93.58% | 6.42% |
| All Japonica | 491 | 92.87% | 7.13% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 97.85% | 2.15% |
| Indica II | 190 | 87.89% | 12.11% |
| Indica Intermediate | 201 | 91.04% | 8.96% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 91 | 81.32% | 18.68% |
| Japonica Intermediate | 66 | 81.82% | 18.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007787578 | C->T | LOC_Os10g14840(LOC_Os10g14840.1) | Non-Synonymous SNP |