Detailed information of SNP:
|
SNP ID:
sf1007803533(Gbrowse)
Chromosome: chr10 Position: 7803533 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 92.46% | 7.54% |
| All Indica | 786 | 92.24% | 7.76% |
| All Japonica | 496 | 91.53% | 8.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 206 | 83.50% | 16.50% |
| Indica Intermediate | 205 | 90.73% | 9.27% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 93 | 77.42% | 22.58% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007803533 | C->T | INTERGENIC | None |