Detailed information of SNP:
|
SNP ID:
sf1007807764(Gbrowse)
Chromosome: chr10 Position: 7807764 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 86.86% | 13.14% |
| All Indica | 770 | 82.34% | 17.66% |
| All Japonica | 496 | 92.14% | 7.86% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 97.04% | 2.96% |
| Indica II | 200 | 68.50% | 31.50% |
| Indica Intermediate | 199 | 68.84% | 31.16% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 70.97% | 29.03% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 81.58% | 18.42% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007807764 | G->A | LOC_Os10g14889(LOC_Os10g14889.1) | INTRON |