Detailed information of SNP:
|
SNP ID:
sf1007878671(Gbrowse)
Chromosome: chr10 Position: 7878671 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1358 | 54.20% | 45.80% |
| All Indica | 748 | 29.14% | 70.86% |
| All Japonica | 495 | 96.16% | 3.84% |
| Aus | 61 | 18.03% | 81.97% |
| Indica I | 342 | 34.21% | 65.79% |
| Indica II | 204 | 22.06% | 77.94% |
| Indica Intermediate | 202 | 27.72% | 72.28% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 84.95% | 15.05% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007878671 | A->G | INTERGENIC | None |