Detailed information of SNP:
SNP ID:
sf1007906621(Gbrowse)
Chromosome: chr10 Position: 7906621 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1262 | 75.28% | 24.72% |
All Indica | 696 | 58.48% | 41.52% |
All Japonica | 480 | 98.33% | 1.67% |
Aus | 41 | 85.37% | 14.63% |
Indica I | 323 | 69.97% | 30.03% |
Indica II | 190 | 40.00% | 60.00% |
Indica Intermediate | 183 | 57.38% | 42.62% |
Temperate Japonica | 335 | 99.40% | 0.60% |
Tropical Japonica | 79 | 92.41% | 7.59% |
Japonica Intermediate | 66 | 100.00% | 0.00% |
Group VI/Aromatic | 9 | 77.78% | 22.22% |
Intermediate | 36 | 80.56% | 19.44% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1007906621 | G->A | INTERGENIC | None |