Detailed information of SNP:
|
SNP ID:
sf1007912398(Gbrowse)
Chromosome: chr10 Position: 7912398 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 97.73% | 2.27% |
| All Indica | 790 | 97.09% | 2.91% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 87.69% | 12.31% |
| Indica I | 373 | 97.86% | 2.14% |
| Indica II | 210 | 96.19% | 3.81% |
| Indica Intermediate | 207 | 96.62% | 3.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007912398 | A->C | LOC_Os10g15079(LOC_Os10g15079.1) | Synonymous |