Detailed information of SNP:
|
SNP ID:
sf1007915653(Gbrowse)
Chromosome: chr10 Position: 7915653 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1313 | 89.64% | 10.36% |
| All Indica | 710 | 83.10% | 16.90% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 57 | 89.47% | 10.53% |
| Indica I | 347 | 87.03% | 12.97% |
| Indica II | 176 | 77.84% | 22.16% |
| Indica Intermediate | 187 | 80.75% | 19.25% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 37 | 86.49% | 13.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007915653 | A->T | INTERGENIC | None |