Detailed information of SNP:
|
SNP ID:
sf1007935475(Gbrowse)
Chromosome: chr10 Position: 7935475 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 89.51% | 10.49% |
| All Indica | 797 | 99.75% | 0.25% |
| All Japonica | 463 | 69.76% | 30.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 331 | 61.33% | 38.67% |
| Tropical Japonica | 69 | 94.20% | 5.80% |
| Japonica Intermediate | 63 | 87.30% | 12.70% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007935475 | C->T | INTERGENIC | None |