Detailed information of SNP:
|
SNP ID:
sf1007949445(Gbrowse)
Chromosome: chr10 Position: 7949445 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 93.79% | 6.21% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 66 | 7.58% | 92.42% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007949445 | C->T | INTERGENIC | None |