Detailed information of SNP:



SNP ID: sf1007975179(Gbrowse)

Chromosome: chr10

Position: 7975179
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1407 66.03% 33.97%
All Indica795 98.99% 1.01%
All Japonica494 12.35% 87.65%
Aus66 72.73% 27.27%
Indica I375 98.93% 1.07%
Indica II211 98.10% 1.90%
Indica Intermediate209 100.00% 0.00%
Temperate Japonica334 3.89% 96.11%
Tropical Japonica93 41.94% 58.06%
Japonica Intermediate67 13.43% 86.57%
Group VI/Aromatic11 18.18% 81.82%
Intermediate41 75.61% 24.39%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1007975179 A->G LOC_Os10g15170(LOC_Os10g15170.1) Synonymous