Detailed information of SNP:
|
SNP ID:
sf1007975179(Gbrowse)
Chromosome: chr10 Position: 7975179 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 66.03% | 33.97% |
| All Indica | 795 | 98.99% | 1.01% |
| All Japonica | 494 | 12.35% | 87.65% |
| Aus | 66 | 72.73% | 27.27% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 3.89% | 96.11% |
| Tropical Japonica | 93 | 41.94% | 58.06% |
| Japonica Intermediate | 67 | 13.43% | 86.57% |
| Group VI/Aromatic | 11 | 18.18% | 81.82% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007975179 | A->G | LOC_Os10g15170(LOC_Os10g15170.1) | Synonymous |