Detailed information of SNP:
|
SNP ID:
sf1007981375(Gbrowse)
Chromosome: chr10 Position: 7981375 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 69.41% | 30.59% |
| All Indica | 779 | 46.73% | 53.27% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 367 | 18.53% | 81.47% |
| Indica II | 207 | 78.74% | 21.26% |
| Indica Intermediate | 205 | 64.88% | 35.12% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1007981375 | G->A | LOC_Os10g15180(LOC_Os10g15180.1) | INTRON |