Detailed information of SNP:
|
SNP ID:
sf1008010674(Gbrowse)
Chromosome: chr10 Position: 8010674 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 96.18% | 3.82% |
| All Indica | 776 | 94.59% | 5.41% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 59 | 93.22% | 6.78% |
| Indica I | 372 | 98.12% | 1.88% |
| Indica II | 202 | 92.08% | 7.92% |
| Indica Intermediate | 202 | 90.59% | 9.41% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008010674 | C->T | INTERGENIC | None |