Detailed information of SNP:
|
SNP ID:
sf1008010896(Gbrowse)
Chromosome: chr10 Position: 8010896 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 90.99% | 9.01% |
| All Indica | 795 | 89.18% | 10.82% |
| All Japonica | 492 | 96.95% | 3.05% |
| Aus | 66 | 68.18% | 31.82% |
| Indica I | 373 | 96.25% | 3.75% |
| Indica II | 212 | 80.19% | 19.81% |
| Indica Intermediate | 210 | 85.71% | 14.29% |
| Temperate Japonica | 331 | 96.07% | 3.93% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008010896 | G->A | LOC_Os10g15250(LOC_Os10g15250.1) | Non-Synonymous SNP |