Detailed information of SNP:
|
SNP ID:
sf1008018204(Gbrowse)
Chromosome: chr10 Position: 8018204 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 78.49% | 21.51% |
| All Indica | 790 | 94.56% | 5.44% |
| All Japonica | 480 | 49.79% | 50.21% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 210 | 94.76% | 5.24% |
| Indica Intermediate | 205 | 93.66% | 6.34% |
| Temperate Japonica | 325 | 41.54% | 58.46% |
| Tropical Japonica | 89 | 83.15% | 16.85% |
| Japonica Intermediate | 66 | 45.45% | 54.55% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008018204 | T->C | INTERGENIC | None |