Detailed information of SNP:
|
SNP ID:
sf1008025468(Gbrowse)
Chromosome: chr10 Position: 8025468 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 77.31% | 22.69% |
| All Indica | 797 | 96.36% | 3.64% |
| All Japonica | 495 | 44.44% | 55.56% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 333 | 32.13% | 67.87% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008025468 | A->G | LOC_Os10g15270(LOC_Os10g15270.1) | Non-Synonymous SNP |