Detailed information of SNP:
|
SNP ID:
sf1008030805(Gbrowse)
Chromosome: chr10 Position: 8030805 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1396 | 96.35% | 3.65% |
| All Indica | 797 | 98.87% | 1.13% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 48 | 20.83% | 79.17% |
| Indica I | 373 | 98.12% | 1.88% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008030805 | A->G | INTERGENIC | None |