Detailed information of SNP:
|
SNP ID:
sf1008112106(Gbrowse)
Chromosome: chr10 Position: 8112106 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 66.22% | 33.78% |
| All Indica | 796 | 45.60% | 54.40% |
| All Japonica | 496 | 92.74% | 7.26% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 15.20% | 84.80% |
| Indica II | 211 | 80.09% | 19.91% |
| Indica Intermediate | 210 | 65.24% | 34.76% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008112106 | G->A | INTERGENIC | None |