Detailed information of SNP:
|
SNP ID:
sf1008135915(Gbrowse)
Chromosome: chr10 Position: 8135915 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 83.80% | 16.20% |
| All Indica | 797 | 98.12% | 1.88% |
| All Japonica | 495 | 57.37% | 42.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 333 | 39.64% | 60.36% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008135915 | A->G | LOC_Os10g16460(LOC_Os10g16460.1) | Non-Synonymous SNP |