Detailed information of SNP:
|
SNP ID:
sf1008248049(Gbrowse)
Chromosome: chr10 Position: 8248049 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1365 | 95.75% | 4.25% |
| All Indica | 766 | 93.21% | 6.79% |
| All Japonica | 478 | 99.79% | 0.21% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 97.32% | 2.68% |
| Indica II | 189 | 90.48% | 9.52% |
| Indica Intermediate | 204 | 88.24% | 11.76% |
| Temperate Japonica | 330 | 100.00% | 0.00% |
| Tropical Japonica | 88 | 98.86% | 1.14% |
| Japonica Intermediate | 60 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008248049 | G->T | INTERGENIC | None |