Detailed information of SNP:
|
SNP ID:
sf1008251031(Gbrowse)
Chromosome: chr10 Position: 8251031 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 86.80% | 13.20% |
| All Indica | 799 | 86.86% | 13.14% |
| All Japonica | 487 | 84.19% | 15.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 73.24% | 26.76% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 327 | 87.16% | 12.84% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 66 | 78.79% | 21.21% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008251031 | G->A | LOC_Os10g16690(LOC_Os10g16690.1) | Non-Synonymous SNP |