Detailed information of SNP:
|
SNP ID:
sf1008270216(Gbrowse)
Chromosome: chr10 Position: 8270216 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1364 | 55.21% | 44.79% |
| All Indica | 753 | 21.78% | 78.22% |
| All Japonica | 492 | 98.37% | 1.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 8.40% | 91.60% |
| Indica II | 187 | 33.16% | 66.84% |
| Indica Intermediate | 197 | 36.04% | 63.96% |
| Temperate Japonica | 332 | 98.80% | 1.20% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008270216 | C->T | LOC_Os10g16750(LOC_Os10g16750.1) | Non-Synonymous SNP |