Detailed information of SNP:
|
SNP ID:
sf1008277508(Gbrowse)
Chromosome: chr10 Position: 8277508 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1353 | 77.53% | 22.47% |
| All Indica | 736 | 59.92% | 40.08% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 321 | 36.76% | 63.24% |
| Indica II | 211 | 83.41% | 16.59% |
| Indica Intermediate | 204 | 72.06% | 27.94% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008277508 | C->T | LOC_Os10g16760(LOC_Os10g16760.1) | Non-Synonymous SNP |