Detailed information of SNP:
|
SNP ID:
sf1008317097(Gbrowse)
Chromosome: chr10 Position: 8317097 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 86.01% | 13.99% |
| All Indica | 789 | 76.17% | 23.83% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 93.32% | 6.68% |
| Indica II | 208 | 60.10% | 39.90% |
| Indica Intermediate | 207 | 61.35% | 38.65% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008317097 | C->T | LOC_Os10g16840(LOC_Os10g16840.1) | Synonymous |