Detailed information of SNP:
|
SNP ID:
sf1008336718(Gbrowse)
Chromosome: chr10 Position: 8336718 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1384 | 89.16% | 10.84% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 462 | 69.48% | 30.52% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 311 | 63.67% | 36.33% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 59 | 57.63% | 42.37% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008336718 | C->T | LOC_Os10g16870(LOC_Os10g16870.1) | Synonymous |