Detailed information of SNP:
|
SNP ID:
sf1008376409(Gbrowse)
Chromosome: chr10 Position: 8376409 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 93.75% | 6.25% |
| All Indica | 790 | 91.90% | 8.10% |
| All Japonica | 496 | 95.56% | 4.44% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 209 | 82.30% | 17.70% |
| Indica Intermediate | 207 | 89.37% | 10.63% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 86.02% | 13.98% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1008376409 | C->G | INTERGENIC | None |